PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005061.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family LSD
Protein Properties Length: 136aa    MW: 14425.6 Da    PI: 8.8211
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005061.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD148.11.9e-15832125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggCrtlL+Y rGA+sVRC++C+t+
  Aco005061.1  8 CGGCRTLLMYNRGATSVRCSCCNTI 32
                 ***********************97 PP

2zf-LSD141.32.5e-134670125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C +Crt+L YP+GA+sV+Ca+C+ V
  Aco005061.1 46 CAQCRTTLLYPYGASSVKCAICHYV 70
                 **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.8E-17535IPR005735Zinc finger, LSD1-type
PfamPF069438.2E-14832IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.4E-124372IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-124670IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MDTAQLICGG CRTLLMYNRG ATSVRCSCCN TINLVRSANG VAQVNCAQCR TTLLYPYGAS  60
SVKCAICHYV TNIGMNNMRP PIPTAHRPNE APYTPPSTSS PTTQTQTVVV ENPMSVDERG  120
KLVSNVVVGV TTGKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010904647.15e-72PREDICTED: protein LOL3-like isoform X1
SwissprotQ2QMB31e-60LOL2_ORYSJ; Protein LOL2
TrEMBLA0A0D9Y1B85e-65A0A0D9Y1B8_9ORYZ; Uncharacterized protein
STRINGMLOC_64242.22e-60(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.73e-49LSD family protein